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Affine and cross-modality registration
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Grading
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See: :doc:`project_grading`.

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Teaching
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* :doc:`coding_style`;
* finishing `optimizing spatial transformations`_;
* :doc:`rotation_2d_3d`;
* :doc:`resampling_with_ndimage`;
* :doc:`more_on_rotation_exercise`;
* :doc:`optimizing_rotation_exercise`;
* :doc:`image_header_and_affine`;
* :doc:`images_and_affines`;
* :doc:`reslicing_with_affines_exercise`;
* `mutual information`_.

.. other-stuff:

    * using the image affine for storing the results of registration;
    * cost functions for registration across imaging modalities;
    * rigid-body, linear, affine registration;
    * implementing an affine registration;
    * affine registration in SPM.

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Reading and homework
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* `Introduction to spatial normalization <https://vimeo.com/126900408>`_
* 15 minute section from the `lecture on spatial processing by Ged Ridgway
  <https://www.ucl.ac.uk/stream/media/swatch?v=1d42446d1c34>`_ - section on
  registration between subjects is from 35.00 - 50.07.